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Nikhil PhD

NLM Informatics Fellow @ University of Washington

Senior Data & Applied Scientist at Microsoft

Seattle, Washington

Ranked #221 out of 4,416 for NLM Informatics Fellow in Washington

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Nikhil PhD's Email Addresses & Phone Numbers

Nikhil PhD's Work Experience

University of Washington

NLM Informatics Fellow

September 2012 to Present

Greater Seattle Area


Associate Bioinformatics Scientist

October 2011 to June 2012


Bioinformatics Programmer

October 2009 to October 2011

Nikhil PhD's Education

University of Washington

Doctor of Philosophy (Ph.D.) Biomedical and Health Informatics

2012 to 2016

Stanford University

Graduate Certificate Bioinformatics

2010 to 2011

University of California, Davis

BS Biotechnology--Bioinformatics

2007 to 2009

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About Nikhil PhD's Current Company

University of Washington

Frequently Asked Questions about Nikhil PhD

What company does Nikhil PhD work for?

Nikhil PhD works for University of Washington

What is Nikhil PhD's role at University of Washington?

Nikhil PhD is NLM Informatics Fellow

What is Nikhil PhD's personal email address?

Nikhil PhD's personal email addresses are n****[email protected], and n****[email protected]

What is Nikhil PhD's business email address?

Nikhil PhD's business email addresses are not available

What is Nikhil PhD's Phone Number?

Nikhil PhD's phone (206) ***-*709

Who are Nikhil PhD's colleagues?

Nikhil PhD's colleagues are Ryan Lynch, Jake Rorrer, Ben Aronowicz, Mike Branski, Wenceslao N., John Young, Alethia Halbig, Thomas Peterson, Melissa Mistero, and Leandra Tejedor

About Nikhil PhD

📖 Summary

Specialties: Programming Languages: -Highly competent in Python -Well-versed in R, Bash/Awk/Sed -Experience with C/C++, Java, Javascript/JQuery/HTML5, Flask/Django/CherryPy, Semantic Web Bioinformatics Tools: -Highly competent with Bedtools, Samtools -Well-versed with GATK, Illumina Software -Experience with Tabix, Picard-tools -Deep knowledge of open-source alignment and de novo assembly programs: Bowtie, BWA, Tophat, BLAT, BLAST, VelvetNLM Informatics Fellow @ From September 2012 to Present (3 years 4 months) Greater Seattle AreaAssociate Bioinformatics Scientist @ -Used machine-learning techniques to provide customers using DesignStudio with probe sequences which have the highest probability of success. -Primarily provided informatics support for the Truseq Custom Amplicon product -Secondary informatics support for MiSeq, HiSeq, Beadchips, and Beta Customers -Primarily human and bacterial genomes From October 2011 to June 2012 (9 months) Bioinformatics Programmer @ -Deep and detailed troubleshootings of various analysis data. -Support for special request data set troubleshooting. -Create a number of bioinformatics and data analysis applications, scripts, programs, and automation. -Work with our development team to suggest clever fixes and workarounds. -Regression testing and validation of analysis software, workflows, and data integrity. From October 2009 to October 2011 (2 years 1 month) Data Analyst @ -Exploratory data analysis of genotyping experiments on SNP 6.0 Genome-Wide Array data -Optimizing the SNP 6.0 genomic array product’s software algorithm to reduce the amount of “failed” data. Lowered the fail rate from ~5% to ~1% -Evaluate any blatantly incorrect SNPs -Correct any immediately known algorithm issues From June 2009 to October 2009 (5 months) Bioinformatics Intern @ -Used bio-perl programming package to develop bioinformatics programs from scratch, geared towards analyzing genomes -Created programs which accurately model and ‘mock’ genomic experiments in silico. -Debugged the code of peers and reconstructed older bioinformatics programs to sequence faster -Primarily maize genome data From January 2009 to June 2009 (6 months) Bioinformatics Intern @ -Designing and coding for a “gene trainer” website (primarily front-end) implementing various databases and interconnecting mass amounts of genetic data. -MySQL and PHP From September 2008 to December 2008 (4 months) Research Associate Intern @ -Ecology/Plant Science lab at UC Davis under Dr. Rice: project involved mimulus range limits. -Helped a graduate student (Dr. Jason Sexton) with many computational and biological procedures in the lab -Reagent concoctions -DNA extractions -SNP identification -Microsatellites From January 2008 to June 2008 (6 months) Biodevelopment Intern @ -Help scientific team design, execute, and analyze experiments -Assist in research on carbon nanotube material for medical respiratory devices -Experiments were with glucose detecting bio-chips From 2008 to 2008 (less than a year) Doctor of Philosophy (Ph.D.), Biomedical and Health Informatics @ University of Washington From 2012 to 2016 Graduate Certificate, Bioinformatics @ Stanford University From 2010 to 2011 BS, Biotechnology--Bioinformatics @ University of California, Davis From 2007 to 2009 AA, Natural Sciences @ Ohlone College From 2005 to 2007 Nikhil PhD is skilled in: Bioinformatics, Genomics, Genetics, R, Biotechnology, Lifesciences, Sequencing, Python, Data Analysis, Genotyping, Science, Algorithms, DNA sequencing, Machine Learning, Molecular Biology, DNA

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In a nutshell

Nikhil PhD's Personality Type

Introversion (I), Intuition (N), Thinking (T), Judging (J)

Average Tenure

1 year(s), 1 month(s)

Nikhil PhD's Willingness to Change Jobs



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